JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGAP28_chr18_6724716_6920716	0/0	c0005	2190	10	1	0	7	0	2	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0006	2190	5	0	0	5	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0007	2190	5	1	0	4	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0008	2190	3	2	1	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0009	2190	3	3	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0010	2190	3	2	1	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0011	2190	3	3	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0012	2190	2	2	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0013	2190	2	0	0	0	0	2	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0014	2190	1	0	1	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0015	2190	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0016	2190	1	0	0	0	1	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0017	2190	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0018	2190	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0019	2190	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0020	2190	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0021	2190	1	0	0	1	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0022	2190	1	0	0	1	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0023	2190	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP29_chr1_94163905_94242584	0/1	c0001	3786	300	61	48	156	11	23	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0002	3786	28	2	16	0	5	5	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	1/0	c0003	3786	15	14	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0004	3786	1	0	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0005	3786	1	0	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0006	3786	1	0	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0007	3786	1	0	0	0	0	1	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0008	3786	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0009	3786	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0010	3786	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0011	3786	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0012	3786	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0013	3786	1	0	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0014	3786	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0015	3786	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	c0016	3786	1	0	0	0	0	1	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP30_chr1_161041946_161074891	1/1	c0001	3306	230	52	34	105	9	28	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0002	3306	82	4	22	44	6	6	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0003	3306	62	12	13	26	3	8	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0004	3306	3	2	1	0	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0005	3306	2	0	0	0	0	2	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0006	3306	2	0	0	2	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0007	3306	1	0	0	1	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0008	3306	1	0	1	0	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0009	3306	1	0	0	1	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0010	3306	1	0	0	0	0	1	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0011	3306	1	0	0	1	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0012	3306	1	0	1	0	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0013	3306	1	1	0	0	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0014	3306	1	1	0	0	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	c0015	3306	1	0	0	0	0	1	copy fasta	ARHGAP30	chr1	161041946	161074891