JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGAP35_chr19_46855997_47010077	0/0	c0004	4500	2	0	0	2	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	c0005	4500	1	1	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	c0006	4500	1	1	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	c0007	4500	1	1	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	c0008	4500	1	1	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	c0009	4500	1	0	1	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	c0010	4500	1	1	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	c0011	4500	1	0	0	0	0	1	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	c0012	4500	1	1	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	c0013	4500	1	0	1	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP36_chrX_131053346_131094885	1/1	c0001	1644	299	72	47	139	9	30	copy fasta	ARHGAP36	chrX	131053346	131094885
ARHGAP36_chrX_131053346_131094885	0/0	c0002	1644	1	0	0	1	0	0	copy fasta	ARHGAP36	chrX	131053346	131094885
ARHGAP36_chrX_131053346_131094885	0/0	c0003	1646	1	0	0	1	0	0	copy fasta	ARHGAP36	chrX	131053346	131094885
ARHGAP36_chrX_131053346_131094885	0/0	c0004	1644	1	0	1	0	0	0	copy fasta	ARHGAP36	chrX	131053346	131094885
ARHGAP39_chr8_144524179_144690846	1/1	c0001	3345	141	55	23	50	2	9	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0002	3345	71	21	17	21	5	7	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0003	3345	5	0	2	1	1	1	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0004	3345	5	5	0	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0005	3345	4	0	4	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0006	3345	4	0	2	0	2	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0007	3345	4	3	0	0	0	1	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0008	3345	2	0	0	2	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0009	3345	1	0	0	1	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0010	3345	1	0	1	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0011	3345	1	1	0	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0012	3345	1	1	0	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0013	3345	1	1	0	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0014	3345	1	1	0	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0015	3345	1	0	0	1	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0016	3345	1	0	1	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0017	3345	1	1	0	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	c0018	3345	1	1	0	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP40_chr20_38596809_38655653	1/1	c0001	2028	196	21	38	99	10	26	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0002	2028	59	6	21	26	2	4	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0003	2028	15	5	3	0	2	5	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0004	2028	6	6	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0005	2028	6	6	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0006	2028	5	5	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0007	2028	5	5	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0008	2028	5	5	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0009	2028	4	4	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0010	2028	4	3	1	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0011	2028	4	4	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0012	2028	3	0	0	0	0	3	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0013	2028	3	3	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0014	2028	2	2	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0015	2028	2	2	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0016	2028	2	2	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0017	2028	2	1	1	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	c0018	2028	2	2	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653