JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGAP45_chr19_1062167_1091628	0/0	c0045	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0046	3411	1	0	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0047	3411	1	0	0	0	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0048	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0049	3411	1	0	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0050	3411	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0051	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0052	3411	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0053	3411	1	0	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0054	3411	1	0	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0055	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0056	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0057	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0058	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0059	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0060	3411	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0061	3411	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0062	3411	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0063	3411	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP4_chrX_153902378_153931264	0/0	c0001	2841	186	52	28	85	4	17	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	1/1	c0002	2841	74	4	17	36	6	9	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0003	2841	11	11	0	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0004	2841	6	5	1	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0005	2841	5	0	1	0	0	4	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0006	2841	4	0	0	4	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0007	2841	2	0	1	0	1	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0008	2841	2	2	0	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0009	2841	2	2	0	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0010	2841	2	0	0	2	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0011	2840	1	0	1	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0012	2841	1	0	0	0	0	1	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0013	2840	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0014	2841	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0015	2843	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0016	2841	1	1	0	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0017	2842	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0018	2841	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0019	2841	1	0	0	0	0	1	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0020	2842	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0021	2841	1	1	0	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0022	2844	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0023	2841	1	0	1	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	c0024	2844	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP5_chr14_32072304_32164728	1/1	c0001	4509	160	48	35	38	8	29	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0002	4509	5	4	1	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0003	4509	3	3	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0004	4509	3	3	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0005	4509	1	0	0	0	0	1	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0006	4509	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0007	4509	1	0	0	1	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728