JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGAP5_chr14_32072304_32164728	0/0	c0008	4509	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0009	4509	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0010	4509	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0011	4509	1	0	0	0	1	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0012	4509	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0013	4509	1	0	1	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0014	4509	1	0	0	1	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0015	4509	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0016	4509	1	0	0	0	1	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0017	4509	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0018	4509	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	c0019	4509	1	0	1	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP6_chrX_11132544_11670920	0/0	c0001	2925	119	24	18	63	3	11	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	c0002	2925	14	6	1	1	2	4	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	c0003	2925	3	3	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	c0004	2925	2	1	1	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	c0005	2925	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	c0006	2926	1	0	0	0	0	1	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	c0007	2925	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	c0008	2925	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	c0009	2925	1	0	0	1	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	c0010	2925	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP8_chr22_44747575_44867784	0/0	c0001	1302	54	12	16	20	2	4	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0002	1302	38	2	6	26	2	2	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0003	1302	36	2	3	25	1	5	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	1/0	c0004	1302	34	1	3	21	2	6	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/1	c0005	1302	34	2	6	20	3	2	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0006	1302	21	4	2	13	1	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0007	1302	18	10	2	2	1	3	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0008	1302	10	3	2	5	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0009	1302	9	2	6	0	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0010	1302	8	0	4	0	2	2	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0011	1302	8	5	0	2	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0012	1302	6	0	0	6	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0013	1302	4	2	0	2	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0014	1302	4	0	1	0	2	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0015	1302	4	4	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0016	1302	4	0	0	3	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0017	1302	4	0	0	4	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0018	1302	4	3	0	0	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0019	1302	3	3	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0020	1302	3	3	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0021	1302	3	2	0	0	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0022	1302	3	2	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0023	1302	3	3	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0024	1302	3	1	1	0	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0025	1302	3	2	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0026	1302	3	3	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0027	1302	3	3	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0028	1302	2	2	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784