Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCC4_chr13_95014835_95306451	0/0	c0070	3978	1	0	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0071	3978	1	1	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0072	3978	1	1	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0073	3978	1	0	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC5_chr3_183914934_184022884	0/1	c0001	4314	136	16	23	74	5	17	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0002	4314	106	21	16	61	1	7	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	1/0	c0003	4314	79	17	18	23	6	14	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0004	4314	29	26	3	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0005	4314	6	5	0	1	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0006	4314	2	0	0	2	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0007	4314	2	1	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0008	4314	2	0	0	2	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0009	4314	2	0	0	0	2	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0010	4314	1	1	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0011	4314	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0012	4314	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0013	4314	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0014	4314	1	0	0	1	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0015	4314	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0016	4314	1	1	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0017	4314	1	1	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0018	4314	1	0	0	0	0	1	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0019	4346	1	0	0	0	0	1	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0020	4314	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0021	4314	1	0	0	1	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0022	4314	1	0	0	1	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	c0023	4314	1	1	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC6_chr16_16144565_16228494	0/0	c0001	4512	92	9	20	43	1	19	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0002	4512	32	5	0	23	0	4	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0003	4512	27	14	4	7	1	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0004	4512	19	2	9	5	2	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0005	4512	19	1	5	6	4	3	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0006	4512	17	0	1	15	0	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0007	4512	10	0	4	4	1	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0008	4512	7	6	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0009	4512	7	0	3	4	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0010	4512	7	2	0	1	4	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0011	4512	6	6	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0012	4512	6	0	1	4	0	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0013	4512	5	0	4	0	0	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0014	4512	5	0	0	5	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0015	4512	4	1	3	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0016	4512	4	3	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0017	4512	4	1	0	3	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0018	4512	4	4	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0019	4512	3	3	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0020	4512	3	3	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0021	4512	2	0	2	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0022	4512	2	0	1	0	1	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0023	4512	2	0	0	0	0	2	copy fasta	ABCC6	chr16	16144565	16228494