JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF39_chr9_35654343_35670195	0/0	c0004	1008	2	2	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	c0005	1008	1	1	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	c0006	1008	1	1	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	c0007	1008	1	0	1	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	c0008	1008	1	1	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF3_chr3_56722420_56806949	0/0	c0001	1581	108	43	10	47	1	7	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0002	1581	81	19	4	46	0	12	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	1/0	c0003	1581	55	7	14	26	4	3	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/1	c0004	1581	37	1	11	13	5	6	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0005	1581	25	1	6	10	5	3	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0006	1581	23	1	3	9	1	9	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0007	1581	19	7	5	5	0	2	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0008	1581	3	0	1	2	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0009	1581	1	0	0	1	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0010	1581	1	0	0	1	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0011	1581	1	1	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0012	1581	1	1	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0013	1581	1	1	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0014	1581	1	0	0	1	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	c0015	1581	1	0	0	1	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF40_chr14_21065304_21095248	0/0	c0001	4560	156	30	34	66	7	19	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0002	4560	62	0	3	47	4	8	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0003	4560	45	27	9	1	0	8	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/1	c0004	4560	26	11	3	10	1	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0005	4560	21	0	10	3	0	8	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0006	4560	10	0	1	5	0	4	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0007	4560	7	0	7	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0008	4560	6	0	0	6	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0009	4560	5	4	1	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0010	4554	5	5	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0011	4560	4	0	3	0	1	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0012	4560	4	3	1	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0013	4560	3	0	0	3	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0014	4560	2	2	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0015	4560	2	2	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0016	4560	2	2	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	1/0	c0017	4560	2	0	0	0	1	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0018	4560	2	0	0	2	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0019	4560	2	2	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0020	4560	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0021	4560	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0022	4560	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0023	4560	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0024	4560	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0025	4560	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0026	4560	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0027	4560	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0028	4560	1	0	0	0	1	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0029	4560	1	0	0	0	0	1	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0030	4560	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248