JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARMC12_chr6_35732032_35754079	0/0	c0017	1023	1	1	0	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0018	1023	1	0	0	0	0	1	copy fasta	ARMC12	chr6	35732032	35754079
ARMC1_chr8_65597458_65639177	1/0	c0001	849	233	76	42	76	6	32	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/1	c0002	849	135	12	27	73	11	11	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	c0003	849	16	2	5	7	1	1	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	c0004	849	4	0	0	4	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	c0005	849	1	0	0	1	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	c0006	849	1	0	0	1	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC2_chr6_108843422_108979476	1/1	c0001	2604	248	65	53	85	12	31	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	c0002	2604	24	1	5	17	0	1	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	c0003	2604	8	8	0	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	c0004	2604	3	0	0	0	1	2	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	c0005	2604	3	1	2	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	c0006	2604	2	2	0	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	c0007	2604	1	0	0	0	1	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	c0008	2604	1	1	0	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC3_chr10_22923053_23043523	0/1	c0001	2619	110	13	23	58	3	12	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	1/0	c0002	2619	90	17	16	40	2	14	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0003	2619	53	26	7	16	0	4	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0004	2619	20	13	6	0	0	1	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0005	2619	6	6	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0006	2619	5	0	0	5	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0007	2619	3	3	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0008	2619	2	0	2	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0009	2619	2	0	0	0	1	1	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0010	2619	2	2	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0011	2619	2	2	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0012	2619	2	0	0	2	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0013	2619	1	1	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0014	2619	1	1	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0015	2619	1	1	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0016	2619	1	1	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	c0017	2619	1	0	0	1	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC5_chr16_31454501_31472165	1/1	c0001	2808	317	65	48	164	11	27	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0002	2808	34	13	0	12	0	9	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0003	2808	12	0	7	2	0	3	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0004	2808	8	0	2	0	2	4	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0005	2808	8	0	2	0	3	3	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0006	2808	4	0	0	4	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0007	2808	4	4	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0008	2808	3	3	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0009	2808	3	3	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0010	2808	3	3	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0011	2808	3	3	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0012	2808	2	2	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0013	2808	2	0	0	0	2	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0014	2808	2	0	0	0	0	2	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0015	2808	2	0	2	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0016	2808	2	0	0	2	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0017	2808	1	0	0	0	0	1	copy fasta	ARMC5	chr16	31454501	31472165