Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCE1_chr4_145093311_145134524	0/0	c0005	1800	1	0	0	1	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCF1_chr6_30566442_30596522	0/1	c0001	2539	281	63	44	121	9	43	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0002	2538	114	18	30	57	5	4	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0003	2538	4	0	3	1	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0004	2539	3	3	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0005	2538	2	0	0	2	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0006	2539	2	2	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0007	2538	2	2	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0008	2539	1	1	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0009	2539	1	1	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0010	2539	1	0	1	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0011	2539	1	0	0	1	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0012	2539	1	0	0	1	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0013	2538	1	0	0	1	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	c0014	2539	1	0	0	0	0	1	copy fasta	ABCF1	chr6	30566442	30596522
ABCF2_chr7_151206484_151232205	0/0	c0001	1872	149	13	34	83	2	17	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0002	1872	92	47	13	29	2	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	1/0	c0003	1872	85	12	15	32	4	21	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/1	c0004	1872	23	5	7	0	5	5	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0005	1872	18	3	6	7	1	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0006	1872	7	5	2	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0007	1872	7	7	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0008	1872	3	3	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0009	1872	1	0	0	1	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0010	1872	1	0	0	1	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0011	1872	1	0	0	1	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0012	1872	1	0	0	0	0	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0013	1872	1	1	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	c0014	1872	1	0	1	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF3_chr3_184181199_184199005	1/1	c0001	2130	293	83	47	116	8	37	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0002	2130	84	2	19	54	4	5	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0003	2130	11	0	6	0	2	3	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0004	2130	10	8	2	0	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0005	2130	4	0	0	4	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0006	2130	3	0	0	3	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0007	2130	2	0	1	0	0	1	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0008	2130	1	0	1	0	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0009	2130	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0010	2130	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0011	2130	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0012	2130	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0013	2154	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0014	2130	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0015	2130	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	c0016	2130	1	1	0	0	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCG1_chr21_42214140_42302244	1/1	c0001	2001	314	75	69	113	17	38	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0002	2001	13	13	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0003	2001	10	0	2	8	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0004	2001	3	0	0	3	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0005	2001	3	1	0	0	1	1	copy fasta	ABCG1	chr21	42214140	42302244