Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCG1_chr21_42214140_42302244	0/0	c0006	2001	3	1	2	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0007	2001	2	2	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0008	2001	1	0	1	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0009	2001	1	0	0	0	0	1	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0010	2001	1	0	0	1	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0011	2001	1	1	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0012	2001	1	1	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	c0013	2001	1	0	0	1	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG2_chr4_88085269_88163639	1/1	c0001	1968	206	68	44	58	6	28	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0002	1968	61	6	12	34	3	6	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0003	1968	60	2	9	42	1	6	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0004	1968	9	0	7	2	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0005	1968	4	4	0	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0006	1968	3	0	0	3	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0007	1968	2	0	2	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0008	1968	1	0	0	1	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0009	1968	1	0	0	1	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0010	1968	1	0	0	1	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0011	1968	1	1	0	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	c0012	1968	1	1	0	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG4_chr11_119144052_119167653	1/1	c0001	1941	338	64	58	158	16	40	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0002	1941	17	15	2	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0003	1941	8	7	1	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0004	1941	6	5	1	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0005	1941	6	3	2	1	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0006	1941	2	0	0	2	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0007	1941	2	0	0	0	0	2	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0008	1941	1	1	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0009	1941	1	0	0	1	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0010	1941	1	0	1	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0011	1941	1	1	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0012	1941	1	0	1	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0013	1941	1	1	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0014	1941	1	1	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0015	1941	1	1	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	c0016	1941	1	1	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG5_chr2_43807472_43843839	1/1	c0001	1956	221	46	52	73	15	33	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0002	1956	68	26	17	13	3	9	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0003	1956	12	4	3	3	0	2	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0004	1956	6	2	2	1	0	1	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0005	1956	5	5	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0006	1956	5	4	1	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0007	1956	2	2	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0008	1956	1	1	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0009	1956	1	1	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0010	1956	1	0	0	1	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0011	1956	1	0	0	1	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0012	1956	1	1	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0013	1956	1	0	0	1	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0014	1956	1	1	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839