JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VARS1_chr6_31772518_31800752	0/0	c0021	3795	1	0	0	1	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0022	3795	1	0	0	1	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0023	3795	1	0	0	1	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0024	3795	1	1	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0025	3795	1	1	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0026	3795	1	1	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0027	3795	1	1	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0028	3795	1	1	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0029	3795	1	1	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS2_chr6_30909238_30931459	0/1	c0001	3192	141	7	23	89	7	14	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0002	3192	83	10	21	38	5	9	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0003	3192	78	24	18	30	2	4	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0004	3192	27	13	4	9	0	1	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0005	3192	25	8	6	2	4	5	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0006	3192	21	13	2	3	0	3	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0007	3192	6	6	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0008	3192	5	0	0	0	0	5	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0009	3192	4	0	0	0	0	4	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0010	3192	4	0	0	4	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0011	3192	3	3	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0012	3192	3	2	1	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0013	3192	2	2	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0014	3192	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0015	3192	1	1	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0016	3192	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0017	3192	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0018	3192	1	1	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0019	3192	1	0	1	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0020	3192	1	0	0	0	0	1	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0021	3192	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0022	3192	1	1	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0023	3192	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0024	3192	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0025	3192	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0026	3192	1	1	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0027	3192	1	0	1	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	c0028	3192	1	0	1	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VASH1_chr14_76756468_76788015	0/1	c0001	1098	223	45	48	89	10	30	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	1/0	c0002	1098	197	46	32	94	6	18	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	c0003	1098	4	4	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	c0004	1098	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	c0005	1098	1	0	0	0	0	1	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	c0006	1098	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	c0007	1098	1	0	0	0	0	1	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	c0008	1098	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	c0009	1098	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	c0010	1098	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	c0011	1098	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH2_chr1_212945541_212996585	1/1	c0001	1068	368	95	59	170	14	28	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	c0002	1068	4	0	2	0	0	2	copy fasta	VASH2	chr1	212945541	212996585