JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VASH2_chr1_212945541_212996585	0/0	c0003	1068	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	c0004	1068	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	c0005	1068	1	0	0	1	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	c0006	1068	1	0	0	1	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	c0007	1068	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	c0008	1068	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASN_chr16_4366848_4388538	0/1	c0001	2022	209	49	53	75	8	23	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0002	2022	102	31	16	38	2	15	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0003	2022	8	8	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0004	2022	7	0	5	0	1	1	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0005	2022	5	1	2	0	1	1	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0006	2022	3	0	0	3	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0007	2022	3	3	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0008	2022	2	2	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0009	2022	2	0	0	2	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0010	2022	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0011	2022	1	1	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0012	2022	1	1	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0013	2022	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0014	2022	1	0	0	0	0	1	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0015	2022	1	0	1	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0016	2022	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0017	2022	1	1	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0018	2022	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0019	2022	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0020	2022	1	1	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0021	2022	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0022	2022	1	0	1	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	c0023	2022	1	0	0	0	0	1	copy fasta	VASN	chr16	4366848	4388538
VASP_chr19_45502479_45531983	1/1	c0001	1143	330	86	56	131	14	41	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	c0002	1143	61	3	15	40	0	3	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	c0003	1143	5	5	0	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	c0004	1143	5	0	0	5	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	c0005	1143	2	0	0	2	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	c0006	1143	1	0	1	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	c0007	1143	1	1	0	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	c0008	1143	1	1	0	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VAT1L_chr16_77783564_77985107	1/1	c0001	1260	260	44	50	114	14	36	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0002	1260	34	24	2	6	0	2	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0003	1260	24	6	5	8	1	4	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0004	1260	6	5	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0005	1260	4	4	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0006	1260	2	0	0	2	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0007	1260	2	1	1	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0008	1260	1	0	0	0	1	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0009	1260	1	0	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0010	1260	1	0	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0011	1260	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0012	1260	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0013	1260	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107