JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VAT1L_chr16_77783564_77985107	0/0	c0014	1260	1	0	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0015	1260	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0016	1260	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	c0017	1260	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1_chr17_43009607_43027385	1/0	c0001	1182	199	63	39	77	4	15	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/1	c0002	1182	132	21	23	52	8	27	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	c0003	1182	4	0	0	2	0	2	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	c0004	1182	3	3	0	0	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	c0005	1182	3	3	0	0	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	c0006	1182	1	0	0	1	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	c0007	1182	1	0	0	0	0	1	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	c0008	1182	1	0	0	0	0	1	copy fasta	VAT1	chr17	43009607	43027385
VAV1_chr19_6767708_6862361	1/1	c0001	2538	263	84	47	99	7	24	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0002	2538	24	4	6	0	2	12	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0003	2538	6	0	2	1	2	1	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0004	2538	2	0	0	0	0	2	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0005	2538	2	0	2	0	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0006	2538	1	0	0	0	1	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0007	2538	1	0	0	1	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0008	2538	1	1	0	0	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0009	2538	1	0	1	0	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0010	2538	1	1	0	0	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0011	2538	1	1	0	0	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0012	2538	1	1	0	0	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0013	2538	1	0	0	1	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	c0014	2538	1	0	0	0	0	1	copy fasta	VAV1	chr19	6767708	6862361
VAV2_chr9_133756894_133997324	1/1	c0001	2637	70	12	13	33	1	9	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0002	2637	31	13	11	0	3	4	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0003	2637	14	10	1	2	0	1	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0004	2637	14	4	7	0	1	2	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0005	2637	11	2	3	1	0	5	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0006	2637	11	9	1	0	1	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0007	2637	10	9	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0008	2637	6	1	3	0	0	2	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0009	2637	5	5	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0010	2637	3	3	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0011	2637	3	3	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0012	2637	2	2	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0013	2637	2	2	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0014	2637	1	0	0	0	0	1	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0015	2637	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0016	2637	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0017	2637	1	0	0	1	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0018	2637	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0019	2637	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0020	2637	1	0	0	0	1	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0021	2637	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0022	2637	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0023	2637	1	0	0	0	0	1	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0024	2637	1	0	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324