JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VCAN_chr5_83466744_83587302	0/0	c0088	10191	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0089	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0090	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0091	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0092	10191	1	0	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0093	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0094	10191	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0095	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0096	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0097	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0098	10191	1	0	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0099	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0100	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0101	10191	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCL_chr10_73993116_74125169	0/1	c0001	3405	82	3	24	37	6	11	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0002	3405	60	27	13	16	2	2	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	1/0	c0003	3405	56	3	13	29	1	9	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0004	3405	12	11	1	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0005	3405	9	0	2	6	1	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0006	3405	9	9	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0007	3405	8	5	3	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0008	3405	8	6	2	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0009	3405	5	4	1	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0010	3405	4	0	0	4	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0011	3405	2	2	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0012	3405	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0013	3405	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0014	3405	1	0	0	1	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0015	3405	1	0	0	1	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0016	3405	1	0	1	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0017	3405	1	0	0	0	0	1	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0018	3405	1	0	0	0	0	1	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0019	3405	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	c0020	3405	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCPIP1_chr8_66623487_66672231	1/1	c0001	3669	181	39	45	58	12	25	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0002	3669	32	30	0	1	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0003	3669	23	4	0	13	0	6	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0004	3669	6	0	3	0	1	2	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0005	3669	5	3	2	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0006	3669	3	3	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0007	3669	1	0	0	0	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0008	3669	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0009	3669	1	0	0	0	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0010	3669	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0011	3669	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0012	3669	1	0	0	0	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0013	3669	1	0	0	0	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	c0014	3669	1	0	0	0	1	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPKMT_chr14_50103637_50121572	1/1	c0001	690	272	50	58	112	12	38	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	c0002	690	152	24	22	96	2	8	copy fasta	VCPKMT	chr14	50103637	50121572