JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VEGFC_chr4_176678538_176797922	0/0	c0003	1260	1	1	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	c0004	1260	1	1	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFD_chrX_15340596_15389413	1/1	c0001	1065	257	55	53	106	11	30	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	c0002	1065	20	13	3	3	0	1	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	c0003	1065	9	8	1	0	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	c0004	1065	8	0	0	8	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	c0005	1065	3	0	0	3	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	c0006	1062	2	2	0	0	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	c0007	1066	1	0	0	1	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	c0008	1064	1	0	0	1	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	c0009	1065	1	0	0	0	0	1	copy fasta	VEGFD	chrX	15340596	15389413
VENTX_chr10_133232855_133246928	0/1	c0001	777	182	38	31	79	7	26	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0002	777	127	28	24	63	3	9	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	1/0	c0003	777	39	9	17	1	4	7	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0004	777	35	7	8	13	1	6	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0005	777	21	9	1	11	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0006	777	5	0	0	3	0	2	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0007	777	3	2	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0008	777	2	2	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0009	777	2	0	0	2	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0010	777	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0011	777	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0012	777	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0013	777	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0014	777	1	0	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0015	777	1	0	0	0	1	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0016	777	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0017	777	1	0	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0018	777	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0019	777	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0020	777	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	c0021	777	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VEPH1_chr3_157254742_157508416	1/1	c0001	2502	123	37	21	41	5	17	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0002	2502	57	15	4	33	1	4	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0003	2502	55	0	14	32	5	4	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0004	2502	9	0	0	9	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0005	2502	9	1	1	6	0	1	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0006	2502	6	6	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0007	2502	6	1	0	5	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0008	2502	5	4	1	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0009	2502	4	4	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0010	2502	4	0	2	2	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0011	2502	4	3	1	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0012	2502	3	0	0	2	0	1	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0013	2502	3	3	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0014	2502	2	0	0	2	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0015	2502	2	0	0	1	0	1	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0016	2502	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0017	2502	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0018	2502	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416