JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VEPH1_chr3_157254742_157508416	0/0	c0019	2502	1	0	0	1	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0020	2502	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0021	2502	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0022	2502	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0023	2502	1	0	0	1	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0024	2502	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0025	2502	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0026	2502	1	0	0	1	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	c0027	2502	1	0	0	0	1	0	copy fasta	VEPH1	chr3	157254742	157508416
VEZF1_chr17_57966552_57993254	1/1	c0001	1566	200	57	21	84	10	26	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0002	1566	19	6	8	0	2	3	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0003	1569	13	6	1	0	1	5	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0004	1569	13	6	5	0	1	1	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0005	1569	9	2	0	6	1	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0006	1563	7	7	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0007	1566	4	1	2	0	1	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0008	1563	3	1	1	0	0	1	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0009	1569	3	3	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0010	1566	1	1	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0011	1590	1	1	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	c0012	1563	1	1	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZT_chr12_95212807_95307799	0/1	c0001	2340	197	61	24	93	3	15	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	1/0	c0002	2340	107	5	26	58	4	13	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0003	2340	57	1	7	45	3	1	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0004	2340	26	3	9	6	3	5	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0005	2340	16	5	5	0	1	5	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0006	2340	10	1	3	2	0	4	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0007	2340	4	3	1	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0008	2340	2	2	0	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0009	2340	1	0	0	0	0	1	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0010	2340	1	0	1	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0011	2340	1	0	1	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0012	2340	1	1	0	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0013	2340	1	1	0	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0014	2340	1	1	0	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	c0015	2340	1	0	1	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VGF_chr7_101157509_101170569	1/1	c0001	1848	400	87	58	191	18	44	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0002	1848	12	0	11	1	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0003	1848	2	2	0	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0004	1848	1	1	0	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0005	1848	1	1	0	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0006	1848	1	0	0	0	0	1	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0007	1848	1	1	0	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0008	1848	1	0	0	0	0	1	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0009	1848	1	0	0	1	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0010	1848	1	0	0	1	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	c0011	1848	1	0	1	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGLL1_chrX_136527215_136561799	1/1	c0001	777	197	19	31	111	5	29	copy fasta	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	c0002	777	53	40	8	2	0	3	copy fasta	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	c0003	777	7	0	7	0	0	0	copy fasta	VGLL1	chrX	136527215	136561799