JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VGLL1_chrX_136527215_136561799	0/0	c0004	777	1	1	0	0	0	0	copy fasta	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	c0005	777	1	0	1	0	0	0	copy fasta	VGLL1	chrX	136527215	136561799
VGLL2_chr6_117260558_117278565	1/0	c0001	954	348	63	66	164	15	39	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/1	c0002	954	63	25	7	22	3	5	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	c0003	954	10	10	0	0	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	c0004	954	3	0	0	3	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	c0005	954	3	0	0	3	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	c0006	954	1	0	0	1	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	c0007	954	1	0	1	0	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	c0008	954	1	0	0	1	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	c0009	954	1	0	0	1	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	c0010	954	1	0	0	1	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL3_chr3_86932973_86996149	1/1	c0001	981	369	90	56	177	12	32	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	c0002	981	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL4_chr3_11551069_11648915	0/1	c0001	891	273	63	51	112	14	32	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0002	891	55	24	9	19	0	3	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	1/0	c0003	891	25	0	8	11	0	5	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0004	891	16	4	0	12	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0005	891	8	0	0	8	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0006	891	3	0	0	3	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0007	891	2	0	0	0	0	2	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0008	891	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0009	891	1	0	0	0	0	1	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0010	891	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0011	891	1	0	0	1	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0012	891	1	0	0	0	0	1	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	c0013	891	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VHLL_chr1_156293624_156304307	1/1	c0001	420	387	84	69	178	16	38	copy fasta	VHLL	chr1	156293624	156304307
VHLL_chr1_156293624_156304307	0/0	c0002	420	1	0	1	0	0	0	copy fasta	VHLL	chr1	156293624	156304307
VHL_chr3_10136778_10158667	1/1	c0001	642	405	94	78	171	14	46	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	c0002	642	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	c0003	642	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	c0004	642	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VIL1_chr2_218414123_218458295	1/1	c0001	2484	306	68	50	125	16	45	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0002	2484	6	6	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0003	2484	5	5	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0004	2484	5	5	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0005	2484	4	4	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0006	2484	2	2	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0007	2484	1	1	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0008	2484	1	0	1	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0009	2484	1	1	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0010	2484	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0011	2484	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0012	2484	1	0	1	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0013	2484	1	0	0	0	0	1	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	c0014	2484	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295
VILL_chr3_37985786_38012185	1/1	c0001	2571	218	38	47	98	8	25	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0002	2571	26	3	6	8	2	7	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0003	2574	25	5	1	18	0	1	copy fasta	VILL	chr3	37985786	38012185