JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VIRMA_chr8_94482689_94558469	0/0	c0012	5439	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0013	5439	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0014	5439	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0015	5439	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0016	5439	1	1	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0017	5439	1	1	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0018	5439	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0019	5439	1	1	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0020	5439	1	0	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0021	5439	1	0	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0022	5439	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0023	5439	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0024	5439	1	1	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0025	5439	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIT_chr2_36691707_36819794	1/1	c0001	2082	219	35	53	87	8	34	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0002	2082	34	4	2	17	1	10	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0003	2082	29	16	0	12	1	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0004	2082	21	15	3	3	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0005	2082	6	6	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0006	2082	3	3	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0007	2082	3	3	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0008	2082	2	2	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0009	2082	2	0	2	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0010	2082	2	2	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0011	2082	1	1	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0012	2082	1	0	0	1	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0013	2082	1	0	0	1	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0014	2082	1	0	0	1	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0015	2082	1	0	0	1	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0016	2082	1	0	0	1	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	c0017	2082	1	1	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VKORC1L1_chr7_65868074_65964558	1/1	c0001	531	350	76	70	154	14	34	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1_chr16_31085854_31099797	1/1	c0001	492	290	63	72	101	18	34	copy fasta	VKORC1	chr16	31085854	31099797
VKORC1_chr16_31085854_31099797	0/0	c0002	492	17	17	0	0	0	0	copy fasta	VKORC1	chr16	31085854	31099797
VKORC1_chr16_31085854_31099797	0/0	c0003	492	1	0	1	0	0	0	copy fasta	VKORC1	chr16	31085854	31099797
VKORC1_chr16_31085854_31099797	0/0	c0004	492	1	0	0	1	0	0	copy fasta	VKORC1	chr16	31085854	31099797
VKORC1_chr16_31085854_31099797	0/0	c0005	492	1	0	1	0	0	0	copy fasta	VKORC1	chr16	31085854	31099797
VLDLR_chr9_2616787_2665056	1/1	c0001	2622	318	54	62	149	14	37	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0002	2622	31	17	1	10	1	2	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0003	2622	8	1	3	0	2	2	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0004	2622	8	7	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0005	2622	6	1	4	0	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0006	2622	4	4	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0007	2622	2	0	2	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0008	2622	2	1	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0009	2622	2	0	0	2	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0010	2622	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0011	2622	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0012	2622	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0013	2622	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056