JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VLDLR_chr9_2616787_2665056	0/0	c0014	2622	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0015	2622	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0016	2622	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0017	2622	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0018	2622	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0019	2622	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	c0020	2622	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VMA21_chrX_151392206_151414364	1/1	c0001	306	286	73	56	118	11	26	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	c0002	306	1	1	0	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	c0003	306	1	0	0	1	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMAC_chr19_5899872_5915853	1/0	c0001	510	340	81	51	158	7	42	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/1	c0002	510	37	9	16	2	3	6	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	c0003	510	3	0	3	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	c0004	510	2	0	0	2	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	c0005	510	1	0	0	1	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	c0006	510	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	c0007	510	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	c0008	510	1	0	0	1	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMO1_chr17_4780285_4791364	1/0	c0001	609	225	58	38	110	7	11	copy fasta	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/1	c0002	609	172	26	32	75	7	31	copy fasta	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	c0003	609	45	4	10	25	4	2	copy fasta	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	c0004	609	2	2	0	0	0	0	copy fasta	VMO1	chr17	4780285	4791364
VMP1_chr17_59702654_59847255	1/1	c0001	1221	283	86	49	111	5	30	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	c0002	1221	2	0	0	1	1	0	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	c0003	1221	1	0	1	0	0	0	copy fasta	VMP1	chr17	59702654	59847255
VN1R1_chr19_57449790_57462140	1/0	c0001	1062	246	68	49	93	9	26	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/1	c0002	1062	181	25	23	107	5	20	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	c0003	1062	1	1	0	0	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	c0004	1062	1	0	0	1	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	c0005	1062	1	0	0	1	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R2_chr19_53253292_53264602	1/0	c0001	1188	177	37	45	65	8	21	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/1	c0002	1188	144	25	27	78	3	10	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0003	1188	80	2	10	58	1	9	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0004	1188	23	9	2	9	1	2	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0005	1188	9	9	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0006	1188	5	5	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0007	1188	3	3	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0008	1188	3	0	2	0	0	1	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0009	1188	2	0	0	1	0	1	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0010	1188	2	0	0	2	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0011	1188	2	2	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0012	1188	1	0	0	0	1	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0013	1188	1	0	0	0	0	1	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0014	1188	1	1	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0015	1188	1	0	0	0	0	1	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0016	1188	1	1	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0017	1188	1	0	0	1	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0018	1188	1	0	0	0	0	1	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	c0019	1188	1	0	0	0	0	1	copy fasta	VN1R2	chr19	53253292	53264602
VN1R4_chr19_53261676_53272723	1/0	c0001	906	205	33	34	111	7	19	copy fasta	VN1R4	chr19	53261676	53272723