JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS8_chr3_184807166_185057604	0/0	c0038	4287	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0039	4287	1	0	0	0	1	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0040	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0041	4287	1	0	1	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0042	4287	1	0	0	0	0	1	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0043	4287	1	0	0	0	0	1	copy fasta	VPS8	chr3	184807166	185057604
VPS9D1_chr16_89702134_89725898	0/1	c0001	1896	204	46	43	79	8	27	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0002	1896	133	27	27	61	9	9	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0003	1896	34	2	0	30	0	2	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0004	1896	10	0	0	5	0	5	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	1/0	c0005	1896	10	7	2	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0006	1896	8	7	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0007	1896	5	0	1	0	0	4	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0008	1896	3	0	0	3	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0009	1896	3	0	0	3	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0010	1896	2	2	0	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0011	1896	2	1	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0012	1896	2	2	0	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0013	1896	2	2	0	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0014	1896	1	0	0	0	0	1	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0015	1896	1	1	0	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0016	1896	1	0	0	0	1	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0017	1896	1	0	0	1	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0018	1896	1	1	0	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0019	1896	1	0	0	1	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0020	1896	1	0	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0021	1896	1	0	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0022	1896	1	0	0	1	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0023	1896	1	0	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0024	1896	1	0	0	1	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	c0025	1896	1	0	0	1	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VRK1_chr14_96792382_96886609	0/0	c0001	1191	106	15	28	43	5	15	copy fasta	VRK1	chr14	96792382	96886609
VRK1_chr14_96792382_96886609	1/0	c0002	1191	101	54	12	18	2	14	copy fasta	VRK1	chr14	96792382	96886609
VRK1_chr14_96792382_96886609	0/1	c0003	1191	70	19	20	16	3	11	copy fasta	VRK1	chr14	96792382	96886609
VRK1_chr14_96792382_96886609	0/0	c0004	1191	1	0	0	1	0	0	copy fasta	VRK1	chr14	96792382	96886609
VRK2_chr2_58041806_58164871	1/0	c0001	1527	221	58	39	91	11	21	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/1	c0002	1527	91	8	24	43	3	12	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	c0003	1527	18	18	0	0	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	c0004	1527	3	0	3	0	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	c0005	1527	2	2	0	0	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	c0006	1527	1	0	0	0	0	1	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	c0007	1527	1	0	0	1	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	c0008	1527	1	0	0	1	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	c0009	1527	1	1	0	0	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	c0010	1527	1	1	0	0	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK3_chr19_49971468_50030372	1/1	c0001	1425	243	52	49	101	9	30	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0002	1425	76	6	8	56	1	5	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0003	1404	21	0	0	17	0	4	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0004	1425	2	2	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0005	1425	1	0	0	1	0	0	copy fasta	VRK3	chr19	49971468	50030372