JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VSIG10L2_chr11_125941044_125961319	0/0	c0022	2382	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0023	2382	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0024	2382	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0025	2382	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0026	2382	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0027	2382	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0028	2382	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0029	2382	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0030	2382	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0031	2382	1	0	1	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0032	2382	1	0	1	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0033	2382	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0034	2382	1	0	0	0	0	1	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0035	2382	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0036	2382	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0037	2382	1	1	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0038	2382	1	0	0	0	0	1	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0039	2382	1	0	0	1	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L_chr19_51326541_51347139	0/0	c0001	2605	145	10	30	73	5	27	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/1	c0002	2605	95	5	25	51	7	6	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0003	2605	79	11	9	46	3	10	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0004	2605	28	12	5	7	3	1	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0005	2605	21	20	0	0	0	1	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0006	2605	17	16	1	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0007	2605	14	0	2	12	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0008	2605	11	10	1	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0009	2605	9	9	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0010	2605	6	0	0	6	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0011	2605	4	0	0	4	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0012	2605	3	0	0	3	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0013	2605	3	0	3	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0014	2605	2	2	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0015	2605	2	0	2	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0016	2605	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0017	2605	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0018	2605	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0019	2605	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0020	2605	1	0	0	0	0	1	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0021	2605	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	1/0	c0022	2604	1	0	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0023	2605	1	0	0	0	0	1	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0024	2605	1	0	0	0	0	1	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0025	2605	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0026	2605	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0027	2605	1	1	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	c0028	2605	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10_chr12_118058593_118109011	0/0	c0001	1617	65	8	11	42	0	4	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0002	1623	45	7	10	8	6	14	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0003	1617	44	10	3	28	0	3	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0004	1623	42	1	8	30	0	3	copy fasta	VSIG10	chr12	118058593	118109011