JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VSIG10_chr12_118058593_118109011	0/0	c0005	1623	37	7	12	15	0	3	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0006	1623	35	15	4	10	3	3	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0007	1623	25	4	1	20	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	1/0	c0008	1623	24	0	13	0	5	5	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0009	1623	15	2	5	0	2	6	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0010	1617	8	0	0	6	0	2	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/1	c0011	1617	8	6	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0012	1623	7	3	0	4	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0013	1617	6	6	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0014	1623	5	0	0	4	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0015	1623	3	3	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0016	1617	3	0	0	3	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0017	1626	3	3	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0018	1620	3	1	1	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0019	1623	3	3	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0020	1617	3	0	0	3	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0021	1623	2	0	0	2	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0022	1617	2	1	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0023	1620	2	0	1	0	1	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0024	1623	2	1	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0025	1623	2	0	2	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0026	1617	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0027	1623	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0028	1623	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0029	1623	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0030	1623	1	0	0	0	1	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0031	1617	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0032	1605	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0033	1617	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0034	1623	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0035	1617	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0036	1623	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0037	1623	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0038	1623	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0039	1623	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0040	1623	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0041	1623	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0042	1617	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	c0043	1623	1	0	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG1_chrX_108040065_108084184	1/0	c0001	1164	277	76	51	108	13	28	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/1	c0002	1164	2	0	1	0	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	c0003	1163	1	0	0	1	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	c0004	1164	1	0	1	0	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG2_chr11_124742474_124757255	1/1	c0001	984	374	84	64	165	14	45	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	c0002	984	10	0	0	10	0	0	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	c0003	984	9	0	8	0	0	1	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	c0004	984	9	8	0	1	0	0	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	c0005	984	2	2	0	0	0	0	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	c0006	984	1	0	0	1	0	0	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	c0007	984	1	0	0	1	0	0	copy fasta	VSIG2	chr11	124742474	124757255