JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBTB24_chr6_109457594_109488219	0/0	c0002	2094	18	16	2	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	c0003	2094	17	16	1	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	c0004	2094	12	0	11	0	1	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	c0005	2094	8	8	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	c0006	2094	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	c0007	2094	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	c0008	2094	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB25_chr14_64473051_64508838	1/1	c0001	1308	348	93	57	144	9	43	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	c0002	1308	30	0	12	18	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	c0003	1308	4	2	2	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	c0004	1308	1	0	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	c0005	1308	1	0	0	0	1	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	c0006	1308	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	c0007	1308	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB26_chr9_122910566_122936512	1/1	c0001	1326	347	87	67	150	9	32	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	c0002	1326	5	0	0	5	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	c0003	1326	4	3	1	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	c0004	1326	1	0	0	1	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	c0005	1326	1	0	0	0	1	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB2_chr6_151359115_151396559	1/1	c0001	1545	231	53	34	112	4	26	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	c0002	1545	148	32	40	51	12	13	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	c0003	1545	2	2	0	0	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	c0004	1545	2	0	0	0	0	2	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	c0005	1545	1	1	0	0	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	c0006	1545	1	0	0	1	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	c0007	1545	1	0	0	0	0	1	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	c0008	1545	1	0	0	1	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	c0009	1545	1	0	0	1	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB32_chr19_35699558_35722038	1/1	c0001	1464	338	81	43	162	8	42	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0002	1464	36	9	10	9	2	6	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0003	1464	10	0	8	0	2	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0004	1464	5	0	3	2	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0005	1464	4	0	0	4	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0006	1464	4	0	4	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0007	1464	1	0	1	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0008	1464	1	1	0	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0009	1464	1	0	1	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0010	1464	1	0	0	1	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	c0011	1464	1	1	0	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB33_chrX_120245812_120263398	1/0	c0001	2019	172	48	30	82	1	10	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/1	c0002	2022	152	18	31	78	8	16	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	c0003	2019	5	5	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	c0004	2019	3	3	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	c0005	2022	1	0	0	1	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	c0006	2018	1	0	0	1	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	c0007	2019	1	1	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	c0008	2019	1	1	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB34_chr9_126855639_126890878	1/1	c0001	1515	236	56	43	92	12	31	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	c0002	1515	4	4	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	c0003	1515	3	0	0	3	0	0	copy fasta	ZBTB34	chr9	126855639	126890878