JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZCCHC2_chr18_62518025_62583579	0/0	c0006	3540	14	13	0	0	0	1	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0007	3537	11	0	5	6	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	1/1	c0008	3537	7	0	1	1	2	1	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0009	3537	6	4	0	0	1	1	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0010	3540	5	0	0	4	1	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0011	3537	4	1	1	0	0	2	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0012	3537	4	3	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0013	3537	3	3	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0014	3537	3	2	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0015	3540	3	0	1	0	2	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0016	3540	3	3	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0017	3540	2	2	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0018	3540	2	2	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0019	3540	2	0	2	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0020	3525	1	0	0	0	1	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0021	3537	1	0	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0022	3537	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0023	3537	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0024	3537	1	0	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0025	3537	1	0	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0026	3537	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0027	3537	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0028	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0029	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0030	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0031	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0032	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0033	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0034	3540	1	0	0	0	0	1	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0035	3540	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0036	3540	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0037	3540	1	0	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0038	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0039	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0040	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0041	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0042	3540	1	0	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0043	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0044	3540	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0045	3540	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0046	3537	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0047	3537	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC3_chr20_292570_305321	0/1	c0001	1212	212	54	54	69	4	30	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	c0002	1212	82	4	12	57	4	5	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	1/0	c0003	1212	60	13	11	27	2	6	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	c0004	1215	56	19	4	28	0	5	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	c0005	1212	11	0	0	11	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	c0006	1215	2	0	0	2	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	c0007	1212	1	0	0	1	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	c0008	1212	1	0	1	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321