JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFP14_chr19_36329453_36384201	0/0	c0003	1602	6	6	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	c0004	1602	6	6	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	c0005	1602	4	0	3	0	0	1	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	c0006	1602	3	2	1	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	c0007	1602	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP1_chr16_75143524_75177234	1/1	c0001	1224	343	89	72	116	16	48	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	c0002	1224	13	0	0	13	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	c0003	1224	2	2	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	c0004	1224	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	c0005	1224	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	c0006	1224	1	0	1	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	c0007	1224	1	0	1	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	c0008	1224	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	c0009	1224	1	0	0	1	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP28_chr19_56533948_56561808	0/0	c0001	2607	95	15	16	52	3	9	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0002	2607	87	1	21	52	2	11	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0003	2607	78	35	6	31	1	5	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0004	2607	64	22	14	16	5	7	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/1	c0005	2607	33	1	14	9	3	5	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	1/0	c0006	2607	24	12	1	8	2	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0007	2607	13	1	0	11	0	1	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0008	2607	7	1	2	0	0	4	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0009	2607	5	0	0	5	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0010	2607	5	4	1	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0011	2607	3	0	0	3	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0012	2607	3	0	3	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0013	2607	3	3	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0014	2607	3	0	3	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0015	2607	3	0	1	0	2	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0016	2607	1	1	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0017	2607	1	0	0	0	0	1	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0018	2607	1	0	0	1	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0019	2607	1	1	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0020	2607	1	0	0	1	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0021	2607	1	0	0	0	0	1	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0022	2607	1	0	0	1	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	c0023	2607	1	1	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP2_chr5_178890913_178938212	1/1	c0001	1386	238	51	44	106	11	24	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0002	1386	109	1	16	69	6	17	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0003	1386	19	17	2	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0004	1386	8	1	5	0	1	1	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0005	1386	5	5	0	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0006	1386	3	2	1	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0007	1386	3	2	0	0	0	1	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0008	1386	2	2	0	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0009	1386	2	0	0	1	0	1	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0011	1386	1	0	1	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	c0012	1386	1	0	1	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP30_chr19_37626006_37660465	1/1	c0001	1560	357	71	66	168	16	34	copy fasta	ZFP30	chr19	37626006	37660465