JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFP90_chr16_68534291_68572131	0/1	c0001	1911	195	20	45	108	7	14	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	1/0	c0002	1911	152	54	25	45	5	22	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	c0003	1911	13	13	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	c0004	1911	2	0	0	0	0	2	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	c0005	1911	2	0	0	2	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	c0006	1911	1	0	0	0	0	1	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	c0007	1911	1	0	0	0	0	1	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	c0008	1911	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	c0009	1911	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP91_chr11_58574063_58626550	1/0	c0001	1713	238	71	40	96	10	20	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/1	c0002	1713	90	12	22	46	3	6	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	c0003	1713	2	0	0	0	1	1	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	c0004	1713	2	2	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	c0005	1713	2	0	0	2	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	c0006	1713	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	c0007	1713	1	0	0	0	0	1	copy fasta	ZFP91	chr11	58574063	58626550
ZFP92_chrX_153406472_153431481	1/1	c0001	1251	310	73	55	138	11	31	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0002	1251	7	6	1	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0003	1251	2	2	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0004	1252	2	0	1	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0005	1252	2	0	0	1	0	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0006	1251	1	0	1	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0007	1252	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0008	1263	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0009	1250	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0010	1252	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	c0011	1251	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFPL1_chr11_65079222_65093398	1/1	c0001	933	351	85	74	134	18	38	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	c0002	933	20	9	2	8	0	1	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	c0003	933	2	2	0	0	0	0	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	c0004	933	1	1	0	0	0	0	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	c0005	933	1	1	0	0	0	0	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	c0006	933	1	0	0	0	0	1	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPM1_chr16_88448280_88542031	0/0	c0001	3015	72	25	20	23	1	3	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0002	3015	47	5	8	17	7	10	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0003	3015	16	0	6	10	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0004	3015	12	0	2	10	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0005	3015	8	8	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0006	3015	8	0	7	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0007	3012	7	7	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0008	3015	7	0	0	4	0	3	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0009	3015	6	1	3	0	2	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0010	3015	6	0	4	0	2	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0011	3015	5	0	2	2	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0012	3015	5	5	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0013	3015	5	5	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0014	3015	5	1	0	4	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0015	3016	4	0	1	1	0	2	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0016	3015	4	0	0	3	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	c0017	3015	3	0	1	0	1	1	copy fasta	ZFPM1	chr16	88448280	88542031