JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFTA_chr11_63754892_63773775	0/0	c0012	2037	1	0	0	0	1	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTRAF1_chr8_144444582_144467871	1/1	c0001	1215	400	93	71	175	16	43	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	c0002	1215	31	0	5	26	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	c0003	1218	4	4	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	c0004	1215	3	0	0	3	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	c0005	1215	2	0	2	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	c0006	1215	2	0	1	0	0	1	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	c0007	1215	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	c0008	1218	1	1	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	c0009	1215	1	0	1	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	c0010	1215	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFX_chrX_24144729_24221255	1/1	c0001	2418	271	54	54	116	13	32	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0002	2418	12	11	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0003	2409	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0004	2418	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0005	2415	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0006	2418	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0007	2418	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0008	2418	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0009	2418	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0010	2418	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0011	2418	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0012	2427	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0013	2418	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	c0014	2418	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFYVE16_chr5_80403064_80488379	0/1	c0001	4620	144	38	27	42	11	25	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	1/0	c0002	4620	40	23	4	6	2	4	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0003	4620	15	9	1	0	3	2	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0004	4620	4	2	1	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0005	4620	3	3	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0006	4620	2	1	1	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0007	4620	2	0	2	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0008	4620	2	0	0	2	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0009	4620	2	2	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0010	4620	2	2	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0011	4620	1	0	0	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0012	4620	1	0	0	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0013	4620	1	0	1	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0014	4620	1	0	0	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0015	4620	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0016	4620	1	0	0	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0017	4620	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0018	4620	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0019	4620	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	c0020	4620	1	0	1	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE19_chr15_40802089_40820084	0/1	c0001	1416	162	15	33	90	8	15	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0002	1421	98	12	22	49	2	13	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	1/0	c0003	1416	57	15	9	21	6	5	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0004	1416	23	22	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	c0005	1421	16	13	1	2	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084