JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZFYVE9_chr1_52137089_52351634	0/0	c0008	4278	2	2	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0009	4278	2	2	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0010	4278	1	0	0	0	0	1	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0011	4278	1	0	0	0	0	1	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0012	4278	1	0	0	0	0	1	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0013	4278	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0014	4278	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0015	4278	1	0	1	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0016	4278	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0017	4278	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0018	4278	1	0	0	1	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0019	4278	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0020	4278	1	0	0	1	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0021	4278	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	c0022	4278	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFY_chrY_2930381_2987506	1/1	c0001	2406	129	18	20	70	3	16	copy fasta	ZFY	chrY	2930381	2987506
ZFY_chrY_2930381_2987506	0/0	c0002	2406	1	0	0	0	1	0	copy fasta	ZFY	chrY	2930381	2987506
ZFY_chrY_2930381_2987506	0/0	c0003	2404	1	0	0	1	0	0	copy fasta	ZFY	chrY	2930381	2987506
ZG16B_chr16_2825303_2837276	0/0	c0001	519	398	65	78	198	15	42	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	c0002	519	13	13	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	c0003	519	6	6	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	c0004	519	5	1	3	0	1	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	c0005	516	4	3	1	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	c0006	519	3	3	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	c0007	519	3	3	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	c0008	519	1	1	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	c0009	519	1	1	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16_chr16_29773256_29787973	0/1	c0001	504	246	44	43	117	11	30	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	1/0	c0002	504	36	19	2	14	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	c0003	504	21	20	1	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	c0004	498	8	0	4	4	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	c0005	504	5	0	4	0	1	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	c0006	504	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	c0007	504	1	0	0	1	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	c0008	504	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	c0009	504	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZGLP1_chr19_10299803_10314815	1/1	c0001	822	325	65	63	156	11	28	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	c0002	822	65	27	16	11	4	7	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	c0003	822	26	0	0	17	1	8	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	c0004	822	10	0	4	3	0	3	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	c0005	822	5	0	0	5	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	c0006	822	4	4	0	0	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	c0007	822	1	0	1	0	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGPAT_chr20_63703039_63741142	0/0	c0001	1536	326	79	64	136	13	34	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	1/1	c0002	1536	10	0	3	2	1	2	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	c0003	1536	2	0	2	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	c0004	1536	2	2	0	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	c0005	1536	1	0	1	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	c0006	1536	1	1	0	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	c0007	1536	1	1	0	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142