JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF154_chr19_57691275_57714204	0/0	c0018	1062	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0019	1314	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0020	1314	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	c0021	1314	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF155_chr19_43979188_44003326	0/1	c0001	1617	176	21	41	81	7	25	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0002	1617	120	14	26	59	5	16	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0003	1617	43	2	12	27	1	1	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0004	1617	39	7	2	28	0	2	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0005	1617	25	3	0	17	3	2	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0006	1617	9	8	1	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0007	1617	7	7	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0008	1617	6	0	1	5	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0009	1617	5	5	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	1/0	c0010	1617	4	3	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0011	1617	4	4	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0012	1617	4	3	0	0	0	1	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0013	1617	3	3	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0014	1617	3	3	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0015	1617	3	3	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0016	1617	1	0	0	0	0	1	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0017	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0018	1617	1	0	1	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0019	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0020	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0021	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0022	1617	1	0	0	1	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0023	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0024	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0025	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0026	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0027	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	c0028	1617	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF157_chrX_47365578_47419498	1/1	c0001	1521	266	48	46	125	11	34	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0002	1521	13	13	0	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0003	1521	6	6	0	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0004	1521	3	3	0	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0005	1521	2	0	2	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0006	1521	2	0	0	2	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0007	1521	1	0	0	0	1	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0008	1521	1	1	0	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0009	1522	1	0	0	1	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0010	1521	1	0	0	0	1	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	c0011	1520	1	0	0	1	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF160_chr19_53061614_53108422	0/1	c0001	2457	213	43	44	95	6	24	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	1/0	c0002	2457	85	3	15	55	2	9	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0003	2457	34	13	11	1	6	3	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0004	2457	29	23	4	0	1	1	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0005	2457	17	0	4	7	2	4	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0006	2457	8	3	2	0	0	3	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0007	2457	2	2	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422