JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF160_chr19_53061614_53108422	0/0	c0008	2457	2	0	1	0	1	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0009	2457	2	2	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0010	2457	2	0	2	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0011	2457	1	0	0	1	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0012	2457	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0013	2457	1	0	0	0	0	1	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0014	2457	1	0	0	1	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0015	2457	1	0	1	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0016	2457	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0017	2457	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0018	2457	1	0	0	0	0	1	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0019	2457	1	0	0	1	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0020	2457	1	0	0	1	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0021	2457	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	c0022	2457	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF165_chr6_28075568_28094563	1/1	c0001	1458	395	92	67	180	14	40	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	c0002	1458	21	0	2	16	0	3	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	c0003	1458	2	0	2	0	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	c0004	1458	1	0	1	0	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	c0005	1458	1	0	0	0	0	1	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	c0006	1458	1	0	0	0	0	1	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	c0007	1458	1	0	0	1	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	c0008	1458	1	0	0	0	0	1	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	c0009	1458	1	0	0	1	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF169_chr9_94254298_94306829	1/0	c0001	1812	172	35	36	74	9	17	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0002	1812	83	14	14	46	1	8	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/1	c0003	1812	52	11	12	19	2	7	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0004	1812	19	2	2	13	0	2	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0005	1812	14	11	1	1	0	1	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0006	1812	10	4	3	1	0	2	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0007	1812	7	0	4	0	0	3	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0008	1812	5	0	0	5	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0009	1812	4	0	0	4	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0010	1812	3	0	1	0	0	2	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0011	1812	3	0	0	0	3	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0012	1812	2	0	0	0	1	1	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0013	1812	2	2	0	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0014	1812	1	0	0	1	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0015	1812	1	0	0	1	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0016	1812	1	0	0	1	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0017	1812	1	0	1	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0018	1812	1	0	0	0	0	1	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	c0019	1812	1	1	0	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF16_chr8_144925358_144955880	1/0	c0001	2049	238	49	52	102	10	24	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/1	c0002	2049	97	12	15	52	6	11	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0003	2049	22	21	1	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0004	2049	11	0	0	11	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0005	2049	6	1	0	5	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0006	2049	3	1	0	2	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	c0007	2049	3	1	2	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880