JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF233_chr19_44254886_44280317	0/0	c0001	2013	143	6	30	83	3	21	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	1/0	c0002	2013	114	28	20	48	2	15	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/1	c0003	2012	99	18	21	55	2	2	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0004	2012	25	22	3	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0005	2012	9	9	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0006	1928	4	4	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0007	2013	4	4	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0008	1928	3	2	1	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0009	2013	1	0	0	0	1	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0010	2013	1	0	0	1	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0011	2013	1	1	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0012	2013	1	1	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0013	2013	1	0	0	1	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0014	2013	1	0	1	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	c0015	2013	1	1	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF234_chr19_44136554_44165313	0/1	c0001	2103	135	32	16	71	3	12	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	1/0	c0002	2103	126	2	29	68	3	23	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0003	2103	100	47	17	32	3	1	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0004	2103	9	0	0	9	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0005	2103	9	1	6	1	0	1	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0006	2103	7	6	1	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0007	2103	5	0	0	5	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0008	2103	3	3	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0009	2103	2	0	2	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0010	2103	1	0	1	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0011	2103	1	0	0	0	0	1	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0012	2103	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0013	2103	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0014	2103	1	1	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	c0015	2103	1	0	0	0	1	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF235_chr19_44281348_44310025	0/0	c0001	2217	147	12	31	76	6	22	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/1	c0002	2217	123	40	23	55	2	2	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	1/0	c0003	2217	112	28	18	49	2	14	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	c0004	2217	4	4	0	0	0	0	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	c0005	2217	4	4	0	0	0	0	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	c0006	2217	1	1	0	0	0	0	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	c0007	2217	1	1	0	0	0	0	copy fasta	ZNF235	chr19	44281348	44310025
ZNF236_chr18_76817557_76977901	0/0	c0001	5544	79	16	10	48	1	4	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0002	5544	68	10	15	33	3	7	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/1	c0003	5544	32	3	17	6	3	2	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0004	5544	27	0	4	21	1	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0005	5544	20	3	6	4	0	7	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0006	5544	13	10	3	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0007	5544	9	2	0	7	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0008	5544	9	0	1	7	1	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0009	5544	8	0	0	8	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0010	5544	7	6	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0011	5544	7	0	1	4	1	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0012	5544	5	5	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	c0013	5544	5	5	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901