JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF26_chr12_132981367_133032102	1/0	c0002	1602	94	41	19	19	3	11	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	c0003	1602	6	6	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	c0004	1602	5	1	1	0	2	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	c0005	1602	3	3	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	c0006	1602	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF273_chr7_64898273_64935981	0/1	c0001	1710	191	24	39	103	8	16	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	1/0	c0002	1710	151	57	27	46	6	14	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0003	1710	36	4	5	23	2	2	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0004	1710	29	0	5	24	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0005	1710	4	0	0	4	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0006	1710	2	0	0	2	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0007	1710	2	0	0	2	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0008	1710	2	0	0	2	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0009	1710	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0010	1710	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0011	1710	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0012	1710	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	c0013	1710	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF274_chr19_58178061_58218562	1/0	c0001	1962	294	77	45	129	9	33	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/1	c0002	1962	37	3	16	0	6	11	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0003	1962	26	7	11	8	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0004	1962	20	0	0	20	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0005	1962	7	0	4	0	1	2	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0006	1962	2	1	0	0	1	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0007	1962	1	0	0	0	1	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0008	1962	1	0	1	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0009	1962	1	1	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0010	1896	1	0	1	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0011	1962	1	0	0	1	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0012	1962	1	1	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0013	1962	1	0	0	1	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0014	1962	1	1	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0015	1962	1	1	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0016	1962	1	0	0	1	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0017	1962	1	0	0	1	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	c0018	1962	1	0	0	1	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF275_chrX_153329153_153357926	0/0	c0001	1290	167	51	19	84	3	10	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	c0002	1290	80	7	14	50	2	7	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	1/1	c0003	1290	70	11	18	18	6	15	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	c0004	1290	3	3	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	c0005	1290	2	2	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	c0006	1290	2	2	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	c0007	1289	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	c0008	1290	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	c0009	1290	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	c0010	1290	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	c0011	1291	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF276_chr16_89716537_89745925	0/1	c0001	1845	187	47	30	87	2	20	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	1/0	c0002	1845	110	30	40	7	13	19	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0003	1845	36	0	1	32	1	2	copy fasta	ZNF276	chr16	89716537	89745925