JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF280A_chr22_22508736_22525270	0/0	c0017	1629	1	0	0	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0018	1629	1	0	0	0	0	1	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0019	1629	1	0	0	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280B_chr22_22479421_22513742	0/1	c0001	1632	257	58	51	103	13	31	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	c0002	1632	64	12	8	32	2	10	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	c0003	1632	29	13	5	9	1	1	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	c0004	1632	5	5	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	c0005	1632	4	4	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280C_chrX_130197707_130273899	0/0	c0001	2214	143	43	24	52	7	17	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	1/1	c0002	2214	125	17	19	68	4	15	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	c0003	2215	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	c0004	2213	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	c0005	2214	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280D_chr15_56625176_56738509	0/1	c0001	2940	237	60	51	92	5	28	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0002	2940	125	12	18	78	5	12	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0003	2940	7	7	0	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0004	2940	4	4	0	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0005	2940	2	0	0	0	0	2	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	1/0	c0006	2940	2	1	0	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0007	2940	2	1	1	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0008	2940	1	0	1	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0009	2940	1	1	0	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0010	2940	1	1	0	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0011	2940	1	0	0	1	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0012	2940	1	0	0	1	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0013	2940	1	1	0	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	c0014	2940	1	0	1	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF281_chr1_200399951_200415036	1/1	c0001	2688	401	72	75	194	18	40	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0002	2688	14	14	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0003	2688	4	1	3	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0004	2688	4	4	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0005	2688	2	0	0	0	0	2	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0006	2688	1	1	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0007	2688	1	1	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0008	2688	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0009	2688	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0010	2688	1	0	1	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0011	2688	1	0	1	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0012	2688	1	1	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0013	2688	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	c0014	2688	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF282_chr7_149190546_149231238	1/1	c0001	2016	220	96	49	53	10	10	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	c0002	2016	18	0	6	0	1	11	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	c0003	2016	3	0	0	3	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	c0004	2016	3	1	0	0	0	2	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	c0005	2034	1	0	0	1	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	c0006	2016	1	0	0	0	0	1	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	c0007	2016	1	0	0	1	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	c0008	2016	1	0	0	0	1	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	c0009	2016	1	1	0	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238