JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF292_chr6_87150565_87270943	0/0	c0034	8172	1	0	0	0	0	1	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0035	8172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0036	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF296_chr19_45066500_45081478	1/1	c0001	1428	394	85	83	169	14	41	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0002	1428	4	4	0	0	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0003	1428	3	2	1	0	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0004	1428	2	0	0	2	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0005	1428	2	1	0	0	0	1	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0006	1428	2	2	0	0	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0007	1428	1	0	0	1	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0008	1428	1	1	0	0	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0009	1428	1	0	0	1	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0010	1428	1	0	0	1	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	c0011	1428	1	1	0	0	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF2_chr2_95160809_95189317	1/1	c0001	1278	356	78	68	162	6	40	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	c0002	1278	2	0	0	2	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	c0003	1278	2	0	2	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	c0004	1278	1	1	0	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	c0005	1278	1	0	0	1	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	c0006	1278	1	1	0	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	c0007	1278	1	1	0	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	c0008	1278	1	1	0	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	c0009	1278	1	0	0	1	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF300_chr5_150889399_150909980	1/1	c0001	1815	333	79	60	142	15	35	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0002	1815	52	3	8	38	0	3	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0003	1812	17	8	1	7	0	1	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0004	1815	4	0	2	2	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0005	1815	2	2	0	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0006	1815	1	0	0	0	1	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0007	1815	1	0	0	0	0	1	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0008	1815	1	0	0	0	0	1	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0009	1815	1	0	0	0	0	1	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0010	1815	1	0	1	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	c0011	1815	1	0	0	1	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF302_chr19_34672678_34691396	1/0	c0001	1200	282	74	47	129	9	22	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0002	1200	114	12	13	76	5	8	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0003	1200	16	4	5	0	1	6	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0004	1200	13	0	1	10	0	2	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0005	1200	5	0	0	5	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/1	c0006	1200	4	0	1	0	0	2	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0007	1200	2	2	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0008	1200	1	1	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0009	1200	1	0	0	1	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0010	1200	1	0	0	1	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0011	1200	1	0	0	0	1	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0012	1200	1	1	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	c0013	1200	1	0	1	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF304_chr19_57346271_57364898	0/1	c0001	1980	320	66	62	144	14	33	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0002	1980	55	2	3	47	0	3	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0003	1980	36	12	5	11	1	7	copy fasta	ZNF304	chr19	57346271	57364898