JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF333_chr19_14685048_14726899	0/0	c0001	1998	146	24	29	71	4	18	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0002	1998	100	45	10	33	3	9	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	1/1	c0003	1998	73	2	25	31	6	7	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0004	1998	26	2	0	21	0	3	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0005	1998	10	2	4	0	1	3	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0006	1998	7	7	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0007	1998	7	7	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0008	1998	3	0	0	3	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0009	1998	2	0	0	2	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0010	1998	2	2	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0011	1998	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0012	1998	1	0	0	0	1	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0013	1998	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0014	1998	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0015	1998	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0016	1998	1	0	0	0	1	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0017	1998	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0018	1998	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0019	1998	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	c0020	1998	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF334_chr20_46494630_46518559	1/1	c0001	2043	339	75	56	157	9	40	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0002	2043	17	0	0	17	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0003	2043	11	11	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0004	2043	5	0	3	2	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0005	2043	3	0	0	3	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0006	2043	3	3	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0007	2043	2	1	1	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0008	2043	2	2	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0009	2043	1	1	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0010	2043	1	1	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0011	2043	1	1	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0012	2043	1	0	0	1	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0013	2043	1	0	0	0	1	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0014	2043	1	0	0	1	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0015	2043	1	1	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0016	2043	1	0	0	0	0	1	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0017	2043	1	0	1	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0018	2043	1	0	0	1	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0019	2043	1	0	1	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	c0020	2043	1	0	0	0	0	1	copy fasta	ZNF334	chr20	46494630	46518559
ZNF335_chr20_45943660_45977203	0/0	c0001	4029	100	27	22	29	7	15	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	1/0	c0002	4029	79	4	20	47	2	5	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0003	4029	62	6	8	45	0	3	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0004	4029	49	0	1	46	0	2	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/1	c0005	4029	32	7	15	0	2	7	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0006	4029	29	26	3	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0007	4029	22	4	0	18	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0008	4029	5	1	3	0	0	1	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0009	4029	3	3	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0010	4029	3	3	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203