JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF391_chr6_27383759_27408908	0/0	c0008	1077	1	0	0	0	0	1	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	c0009	1077	1	0	1	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF394_chr7_99488240_99505281	1/1	c0001	1686	343	80	55	150	13	43	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0002	1686	5	0	0	5	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0003	1686	5	5	0	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0004	1686	4	3	1	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0005	1686	3	3	0	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0006	1686	2	0	0	2	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0007	1686	2	0	1	0	1	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0008	1686	1	1	0	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0009	1686	1	0	1	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0010	1696	1	0	0	1	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0011	1686	1	1	0	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0012	1686	1	1	0	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0013	1686	1	0	0	1	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0014	1686	1	0	0	1	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	c0015	1686	1	0	0	0	0	1	copy fasta	ZNF394	chr7	99488240	99505281
ZNF395_chr8_28340590_28391460	1/1	c0001	1542	250	71	34	117	6	20	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0002	1542	110	7	22	66	4	11	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0003	1542	7	7	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0004	1542	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0005	1542	1	0	0	0	0	1	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0006	1542	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0007	1542	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0008	1542	1	0	0	0	0	1	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0009	1542	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0010	1542	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0011	1542	1	0	0	0	0	1	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	c0012	1542	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF396_chr18_35361694_35382337	1/1	c0001	1008	383	75	71	184	13	38	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	c0002	1008	16	16	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	c0003	1008	2	0	0	2	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	c0004	1008	2	2	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	c0005	1008	2	0	0	2	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	c0006	1008	1	0	1	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	c0007	1008	1	0	0	0	1	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	c0008	1008	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	c0009	1008	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	c0010	1008	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF397_chr18_35236034_35254808	1/0	c0001	1605	289	60	52	152	9	15	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/1	c0002	1605	142	33	22	61	5	20	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	c0003	1605	4	4	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	c0004	1605	3	0	0	3	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	c0005	1605	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	c0006	1605	1	0	0	0	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF398_chr7_149142453_149188042	0/1	c0001	1929	191	35	49	70	10	26	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	1/0	c0002	1929	91	52	18	6	5	9	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	c0003	1929	22	5	2	15	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	c0004	1929	5	1	3	0	1	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	c0005	1929	1	0	0	1	0	0	copy fasta	ZNF398	chr7	149142453	149188042