JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF414_chr19_8504678_8519167	0/0	c0007	1173	5	2	0	2	0	1	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0008	1174	1	0	0	0	0	1	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0009	1173	1	0	1	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0010	1174	1	0	0	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0011	1173	1	0	0	0	0	1	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0012	1173	1	0	0	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0013	1173	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0014	1173	1	0	1	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0015	1173	1	0	0	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF415_chr19_53102879_53137910	1/0	c0001	1668	145	28	25	64	4	23	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0002	1668	109	16	23	53	5	12	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/1	c0003	1668	87	1	16	61	5	3	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0004	1668	34	19	13	0	0	2	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0005	1668	22	21	1	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0006	1668	6	0	3	0	2	1	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0007	1668	5	0	0	5	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0008	1668	4	4	0	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0009	1668	3	0	0	3	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0010	1668	2	0	0	2	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0011	1668	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0012	1668	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0013	1668	1	1	0	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0014	1668	1	1	0	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0015	1668	1	1	0	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0016	1668	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0017	1668	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0018	1668	1	0	0	0	0	1	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0019	1668	1	0	1	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0020	1668	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	c0021	1668	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF416_chr19_57566566_57583911	1/1	c0001	1785	327	64	51	163	10	37	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0002	1785	70	18	17	24	4	7	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0003	1785	10	0	0	10	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0004	1785	7	0	0	7	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0005	1785	3	3	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0006	1785	3	3	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0007	1785	2	2	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0008	1785	2	0	0	0	0	2	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0009	1785	1	1	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0010	1785	1	0	0	1	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0011	1785	1	0	0	1	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	c0012	1785	1	1	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF417_chr19_57900774_57921592	0/0	c0001	1728	158	52	24	65	6	11	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	1/1	c0002	1728	116	6	27	58	7	16	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0003	1728	97	14	13	55	4	11	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0004	1728	6	6	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0005	1728	6	0	4	0	1	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0006	1728	5	0	5	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0007	1728	4	0	0	4	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0008	1728	4	4	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592