JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF444_chr19_56136287_56165893	0/0	c0007	984	3	1	2	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0008	985	2	0	0	2	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0009	984	2	0	0	0	0	2	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0010	984	1	0	0	1	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0011	984	1	0	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0012	984	1	0	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0013	984	1	0	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0014	985	1	0	0	1	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0015	984	1	0	0	1	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0016	984	1	0	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0017	984	1	1	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF445_chr3_44426705_44482670	1/1	c0001	3096	224	91	50	50	10	21	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0002	3096	7	1	5	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0003	3096	3	1	0	0	1	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0004	3096	2	0	0	0	2	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0005	3096	2	0	0	2	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0006	3096	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0007	3096	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0008	3096	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0009	3096	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0010	3096	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0011	3096	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0012	3096	1	0	0	0	1	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	c0013	3096	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF446_chr19_58471352_58486230	1/0	c0001	1353	256	35	51	139	9	21	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/1	c0002	1353	93	25	12	43	6	6	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0003	1353	44	7	17	12	1	7	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0004	1353	10	9	0	0	0	1	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0005	1353	8	7	1	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0006	1353	5	0	0	5	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0007	1353	4	4	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0008	1353	3	0	0	3	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0009	1353	2	0	0	0	2	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0010	1353	2	2	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0011	1353	1	0	0	0	0	1	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0012	1353	1	1	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0013	1353	1	0	0	1	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0014	1353	1	1	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0015	1353	1	0	0	1	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0016	1353	1	1	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	c0017	1353	1	0	1	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF449_chrX_135339796_135368413	1/0	c0001	1557	234	37	45	119	9	23	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	c0002	1557	49	26	6	17	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/1	c0003	1557	8	0	6	0	0	1	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	c0004	1562	1	0	0	1	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	c0005	1557	1	1	0	0	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	c0006	1557	1	0	0	1	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF44_chr19_12266808_12299883	1/0	c0001	1848	242	64	40	110	8	19	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/1	c0002	1848	101	16	22	50	4	8	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0003	1848	7	7	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883