JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF467_chr7_149759182_149778588	0/0	c0006	1788	10	9	1	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0007	1788	7	0	0	7	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0008	1788	7	0	0	7	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0009	1788	4	0	0	0	2	2	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0010	1788	3	3	0	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0011	1800	3	0	2	1	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0012	1788	2	2	0	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0013	1788	2	2	0	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0014	1788	1	1	0	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0015	1788	1	0	0	1	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0016	1788	1	0	0	1	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0017	1788	1	0	0	1	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF468_chr19_52833010_52862619	1/1	c0001	1569	180	15	29	109	9	16	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0002	1569	85	8	13	48	4	12	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0003	1569	67	27	8	13	3	16	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0004	1569	37	10	9	13	1	4	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0005	1569	9	8	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0006	1569	7	5	2	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0007	1569	6	6	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0008	1569	5	2	2	0	1	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0009	1569	5	0	5	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0010	1569	4	4	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0011	1569	3	3	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0012	1569	2	2	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0013	1485	2	0	2	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0014	1569	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0015	1569	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0016	1569	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0017	1569	1	0	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0018	1569	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0019	1569	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0020	1569	1	0	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0021	1233	1	0	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0022	1569	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0023	1569	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0024	1569	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0025	1569	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0026	1569	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	c0027	1569	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF469_chr16_88377959_88445753	0/0	c0001	11862	36	1	13	15	0	7	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0002	11862	30	4	7	16	0	3	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0003	11862	19	0	2	14	1	2	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0004	11862	6	0	0	5	1	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0005	11862	5	5	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0006	11862	5	0	4	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0007	11862	5	0	2	2	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0008	11862	5	1	2	2	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0009	11862	4	4	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0010	11862	4	3	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0011	11862	4	0	0	4	0	0	copy fasta	ZNF469	chr16	88377959	88445753