Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACAD10_chr12_111681053_111762099	0/0	c0016	3180	1	0	0	1	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD11_chr3_132553141_132664809	1/1	c0001	2343	234	61	31	109	11	20	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0002	2343	30	0	8	19	1	2	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0003	2343	24	22	2	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0004	2343	6	1	0	5	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0005	2343	4	0	0	3	0	1	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0006	2343	3	3	0	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0007	2343	3	1	0	0	0	2	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0008	2343	2	0	2	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0009	2343	2	0	0	1	0	1	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0010	2343	2	0	0	2	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0011	2343	1	0	1	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0012	2343	1	1	0	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0013	2343	1	0	0	1	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0014	2343	1	1	0	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0015	2343	1	0	1	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	c0016	2343	1	0	1	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD8_chr11_134248568_134270855	0/0	c0001	1248	435	86	81	210	16	42	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	c0002	1248	6	6	0	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	c0003	1248	2	1	1	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	c0004	1248	2	2	0	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	c0005	1248	1	1	0	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	c0006	1248	1	0	0	1	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	c0007	1248	1	0	0	1	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD9_chr3_128874620_128918114	1/0	c0001	1866	136	15	31	57	10	22	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0002	1866	134	16	27	74	6	11	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0003	1866	68	46	13	3	2	4	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0004	1866	19	8	0	8	0	3	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0005	1866	3	0	0	3	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0006	1866	2	0	1	0	0	1	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0007	1866	2	2	0	0	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/1	c0008	1866	1	0	0	0	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0009	1866	1	0	0	1	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0010	1866	1	0	0	1	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0011	1866	1	1	0	0	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0012	1866	1	0	0	1	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0013	1866	1	0	0	0	0	1	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0014	1866	1	1	0	0	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	c0015	1866	1	1	0	0	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACADL_chr2_210182923_210230447	1/0	c0001	1293	206	73	30	74	8	20	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/0	c0002	1293	58	7	12	24	5	10	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/0	c0003	1293	4	4	0	0	0	0	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/0	c0004	1293	4	0	3	0	1	0	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/0	c0005	1293	1	0	1	0	0	0	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/1	c0006	1293	1	0	0	0	0	0	copy fasta	ACADL	chr2	210182923	210230447
ACADM_chr1_75719709_75768679	1/1	c0001	1266	293	63	53	133	12	30	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	c0002	1266	40	7	18	3	2	10	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	c0003	1266	13	13	0	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	c0004	1266	10	9	1	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	c0005	1266	2	2	0	0	0	0	copy fasta	ACADM	chr1	75719709	75768679