Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF502_chr3_44707660_44728831	0/0	c0001	1635	151	15	23	85	5	23	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	1/0	c0002	1635	145	63	31	29	5	16	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/1	c0003	1635	41	0	20	11	5	4	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0004	1635	8	8	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0005	1635	6	6	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0006	1635	4	3	0	0	1	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0007	1635	2	0	2	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0008	1635	2	2	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0009	1635	1	1	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0010	1635	1	0	0	1	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0011	1635	1	0	0	1	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0012	1635	1	0	0	1	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	c0013	1635	1	0	0	0	0	1	copy fasta	ZNF502	chr3	44707660	44728831
ZNF503_chr10_75392830_75406764	1/1	c0001	1941	318	56	61	150	15	34	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0002	1935	18	15	2	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0003	1935	14	13	1	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0004	1941	4	0	2	0	0	2	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0005	1953	3	0	0	0	1	2	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0006	1941	3	1	1	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0007	1941	2	0	0	2	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0008	1941	2	0	0	2	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0009	1941	1	0	1	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0010	1941	1	1	0	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0011	1941	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0012	1941	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0013	1941	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0014	1941	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0015	1935	1	1	0	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	c0016	1935	1	1	0	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF506_chr19_19787711_19826750	1/1	c0001	1335	378	59	69	187	11	50	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	c0002	1335	21	17	3	0	1	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	c0003	1335	10	8	2	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	c0004	1335	6	6	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	c0005	1335	1	1	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	c0006	1335	1	1	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	c0007	1546	1	0	0	1	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF507_chr19_32340610_32392667	0/1	c0001	2862	307	86	56	119	12	33	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	1/0	c0002	2862	45	0	6	34	1	3	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0003	2862	3	0	0	3	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0004	2862	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0005	2862	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0006	2862	1	0	0	0	1	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0007	2862	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0008	2862	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0009	2862	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0010	2862	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0011	2862	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	c0012	2862	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF510_chr9_96749553_96783087	1/1	c0001	2052	155	22	39	71	6	15	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	c0002	2052	42	0	0	41	0	1	copy fasta	ZNF510	chr9	96749553	96783087