Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF518B_chr4_10434880_10462426	0/0	c0021	3225	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0022	3225	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF519_chr18_14094938_14137435	0/0	c0001	1623	147	62	36	21	8	20	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0002	1623	88	0	21	64	1	2	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0003	1623	80	1	16	51	4	8	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0004	1623	74	10	3	54	0	7	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0005	1623	8	8	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0006	1623	8	7	1	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	1/0	c0007	1623	5	4	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0008	1623	3	3	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0009	1539	2	0	1	0	1	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0010	1623	1	1	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0011	1707	1	0	0	0	0	1	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0012	1623	1	0	0	1	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/1	c0013	1623	1	0	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	c0014	1623	1	0	0	1	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF521_chr18_25056924_25357166	1/1	c0001	3936	150	47	21	53	8	19	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0002	3936	36	8	7	15	0	6	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0003	3936	12	11	1	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0004	3936	4	4	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0005	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0006	3936	1	0	0	1	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0007	3936	1	0	1	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0008	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0009	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0010	3936	1	0	0	0	0	1	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0011	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0012	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0013	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0014	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0015	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0016	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0017	3936	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	c0018	3936	1	0	0	1	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF524_chr19_55595288_55608138	0/1	c0001	795	245	41	40	121	13	29	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	c0002	795	107	27	32	30	5	13	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	1/0	c0003	795	62	22	16	18	0	5	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	c0004	795	5	5	0	0	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	c0005	795	2	0	0	2	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	c0006	795	1	0	0	1	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	c0007	795	1	1	0	0	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	c0008	795	1	0	0	1	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	c0009	795	1	0	0	1	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	c0010	795	1	0	0	0	0	1	copy fasta	ZNF524	chr19	55595288	55608138
ZNF525_chr19_53360705_53391590	0/1	c0001	1440	212	32	37	108	9	25	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	1/0	c0002	1440	204	59	29	89	8	18	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	c0003	1440	16	0	13	0	1	2	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	c0004	1440	2	2	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	c0005	1440	2	0	2	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	c0006	1440	2	0	1	0	0	1	copy fasta	ZNF525	chr19	53360705	53391590