Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF525_chr19_53360705_53391590	0/0	c0007	1440	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	c0008	1440	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	c0009	1440	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	c0010	1440	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF526_chr19_42215312_42233201	1/1	c0001	2013	291	70	63	113	13	30	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0002	2013	35	0	8	17	2	8	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0003	2010	6	6	0	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0004	2013	1	0	0	0	0	1	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0005	2013	1	0	0	1	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0006	2013	1	1	0	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0007	2013	1	0	0	0	1	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0008	2013	1	0	0	1	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0009	2013	1	0	0	0	0	1	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0010	2013	1	0	1	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0011	2013	1	1	0	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0012	2013	1	0	0	1	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	c0013	2013	1	0	0	1	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF527_chr19_37366099_37398066	1/1	c0001	1830	236	44	49	105	11	25	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0002	1830	119	35	11	63	1	9	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0003	1833	20	1	6	11	1	1	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0004	1830	13	2	6	4	0	1	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0005	1830	3	3	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0006	1830	2	0	0	0	0	2	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0007	1830	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0008	1830	1	1	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0009	1830	1	0	0	0	1	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0010	1830	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	c0011	1830	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF528_chr19_52392849_52423401	1/1	c0001	1887	451	94	75	220	14	46	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0002	1887	7	1	4	2	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0003	1887	3	3	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0004	1887	3	0	0	3	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0005	1887	2	2	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0006	1887	1	0	0	0	0	1	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0007	1887	1	0	0	1	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0008	1887	1	0	1	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0009	1887	1	0	0	1	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0010	1887	1	0	0	0	1	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0011	1887	1	0	0	0	1	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0012	1887	1	0	0	0	0	1	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0013	1887	1	0	0	0	0	1	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0014	1887	1	0	0	0	0	1	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	c0015	1887	1	0	0	1	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF529_chr19_36538613_36578292	1/1	c0001	1692	146	19	30	77	5	13	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0002	1692	110	30	25	32	7	16	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0003	1692	62	21	13	20	3	5	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0004	1692	39	16	7	13	0	3	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0005	1692	3	3	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0006	1692	2	0	0	2	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0007	1692	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292