Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF529_chr19_36538613_36578292	0/0	c0008	1692	1	0	0	0	0	1	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0009	1692	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0010	1692	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0011	1692	1	0	0	0	1	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	c0012	1692	1	0	1	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF530_chr19_57594885_57615098	0/0	c0001	1701	168	34	34	65	10	25	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	1/1	c0002	1701	124	11	22	74	1	14	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0003	1701	88	32	8	38	4	6	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0004	1701	41	4	2	30	1	4	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0005	1701	5	5	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0006	1701	4	4	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0007	1701	3	0	3	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0008	1701	2	0	1	0	0	1	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0009	1701	2	2	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0010	1701	2	2	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0011	1701	2	2	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0012	1701	1	1	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0013	1701	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0014	1701	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0015	1701	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0016	1701	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0017	1701	1	1	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	c0018	1701	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF532_chr18_58859877_58991480	1/1	c0001	3906	258	80	51	94	13	18	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0002	3906	57	1	14	35	1	6	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0003	3906	14	2	1	10	0	1	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0004	3906	9	0	3	2	0	4	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0005	3906	4	2	2	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0006	3906	3	3	0	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0007	3906	2	0	1	0	0	1	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0008	3906	2	0	0	2	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0009	3906	1	1	0	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0010	3906	1	1	0	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0011	3906	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0012	3906	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	c0013	3906	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF534_chr19_52424148_52447499	0/1	c0001	1986	307	43	62	143	14	44	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	1/0	c0002	1986	82	0	9	66	2	4	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0003	1986	26	23	3	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0004	1986	9	8	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0005	1986	8	8	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0006	1986	5	4	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0007	1986	5	1	4	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0008	1986	4	4	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0009	1986	3	3	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0010	1986	3	0	0	3	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0011	1986	2	0	0	0	2	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0012	1986	2	2	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0013	1986	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0014	1986	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499