Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF574_chr19_42071166_42086552	1/1	c0001	2691	296	76	63	109	10	36	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0002	2691	13	13	0	0	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0003	2691	7	0	0	7	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0004	2691	6	0	0	6	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0005	2691	4	0	0	4	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0006	2691	3	2	1	0	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0007	2691	1	1	0	0	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0008	2691	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0009	2691	1	0	1	0	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0010	2691	1	0	1	0	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0011	2691	1	0	0	0	0	1	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0012	2691	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0013	2691	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0014	2691	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0015	2691	1	0	0	0	0	1	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0016	2701	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	c0017	2691	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF575_chr19_43528188_43541087	1/1	c0001	738	423	88	78	193	16	46	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	c0002	738	1	0	0	1	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	c0003	738	1	0	0	1	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	c0004	738	1	0	0	1	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF576_chr19_43591595_43606157	1/1	c0001	513	408	84	78	178	18	48	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	c0002	513	6	6	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	c0003	513	4	0	0	4	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	c0004	513	2	0	0	2	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	c0005	513	1	0	0	0	0	1	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	c0006	513	1	0	0	0	0	1	copy fasta	ZNF576	chr19	43591595	43606157
ZNF577_chr19_51862048_51892951	1/1	c0001	1458	192	30	34	100	10	16	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0002	1458	112	14	22	52	6	18	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0003	1458	24	5	9	3	0	7	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0004	1458	8	5	3	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0005	1458	7	7	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0006	1458	7	7	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0007	1458	6	6	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0008	1458	3	3	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0009	1458	3	3	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0010	1458	3	2	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0011	1458	2	2	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0012	1458	2	0	0	2	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0013	1458	2	2	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0014	1458	1	0	0	0	0	1	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0015	1458	1	0	0	1	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0016	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0017	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0018	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0019	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0020	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0021	1458	1	0	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0022	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0023	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951