Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF581_chr19_55638649_55650623	1/1	c0001	594	374	89	79	144	14	46	copy fasta	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	0/0	c0002	594	16	2	8	2	0	4	copy fasta	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	0/0	c0003	594	7	5	1	1	0	0	copy fasta	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	0/0	c0004	594	1	0	0	1	0	0	copy fasta	ZNF581	chr19	55638649	55650623
ZNF582_chr19_56377751_56398534	1/0	c0001	1554	375	80	77	159	14	44	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/1	c0002	1554	89	7	6	69	2	4	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	c0003	1554	10	10	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	c0004	1554	3	0	0	3	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	c0005	1554	2	2	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	c0006	1554	2	0	0	0	0	2	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	c0007	1554	1	1	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	c0008	1554	1	0	1	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	c0009	1554	1	0	0	1	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF583_chr19_56399332_56432364	0/1	c0001	1710	221	54	32	99	7	28	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	1/0	c0002	1710	107	32	28	23	9	14	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	c0003	1710	4	4	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF584_chr19_58403649_58423327	1/0	c0001	1266	235	20	47	130	10	27	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/1	c0002	1266	117	46	15	43	5	7	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0003	1266	38	4	14	9	2	9	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0004	1266	20	16	4	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0005	1266	8	7	1	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0006	1266	2	0	2	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0007	1266	1	0	0	0	1	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0008	1266	1	1	0	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0009	1266	1	0	1	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0010	1266	1	0	0	0	0	1	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0011	1266	1	0	0	1	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	c0012	1266	1	0	0	1	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF585A_chr19_37140540_37177695	1/0	c0001	2310	154	14	29	84	8	18	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/1	c0002	2310	58	16	17	7	8	9	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0003	2310	52	18	8	15	1	10	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0004	2310	43	14	10	18	0	1	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0005	2310	13	13	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0006	2310	7	7	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0007	2310	5	3	2	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0008	2310	4	3	1	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0009	2310	2	0	1	0	1	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0010	2310	1	0	1	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0011	2310	1	0	0	1	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0012	2310	1	1	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0013	2310	1	1	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0014	2310	1	0	1	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	c0015	2310	1	0	0	1	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585B_chr19_37176579_37215536	1/0	c0001	2310	220	44	37	100	10	28	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/1	c0002	2310	82	22	27	22	3	7	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0003	2310	18	0	0	18	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0004	2310	7	7	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0005	2310	6	6	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0006	2310	3	0	0	1	1	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0007	2310	3	3	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536