Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF587_chr19_57844859_57870117	0/0	c0019	1728	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0020	1728	1	0	0	0	1	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0021	1728	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0022	1728	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0023	1728	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0024	1728	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0025	1728	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0026	1728	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF589_chr3_48236104_48275990	1/0	c0001	1095	220	51	45	93	8	22	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/1	c0002	1095	73	20	15	27	2	8	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	c0003	1095	7	4	2	1	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	c0004	1095	1	0	0	1	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	c0005	1095	1	0	1	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	c0006	1095	1	0	1	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	c0007	1095	1	1	0	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF592_chr15_84743592_84811445	0/0	c0001	3804	175	41	28	91	6	9	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/1	c0002	3804	116	25	16	56	7	11	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	1/0	c0003	3804	57	20	17	5	3	11	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0004	3804	4	1	1	2	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0005	3804	2	0	0	2	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0006	3804	2	2	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0007	3804	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0008	3804	1	0	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0009	3804	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0010	3804	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0011	3804	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0012	3804	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0013	3804	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0014	3804	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0015	3804	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0016	3804	1	0	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0017	3804	1	0	0	0	0	1	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0018	3804	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0019	3804	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	c0020	3804	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF593OS_chr1_26164521_26176832	1/1	c0001	192	366	92	78	138	14	42	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593_chr1_26164908_26175873	1/1	c0001	405	187	38	43	63	14	27	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	c0002	405	182	50	34	84	0	14	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	c0003	405	2	1	1	0	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	c0004	405	1	1	0	0	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	c0005	405	1	1	0	0	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	c0006	405	1	0	0	0	0	1	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	c0007	405	1	0	0	1	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	c0008	405	1	1	0	0	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF594_chr17_5174535_5196868	1/0	c0001	2424	126	25	12	79	2	7	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0002	2424	106	1	14	75	3	13	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0003	2424	75	13	34	12	5	11	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/1	c0004	2424	30	3	7	12	3	4	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0005	2421	14	13	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0006	2421	11	10	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868