Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF610_chr19_52331243_52372778	0/0	c0009	1389	4	3	1	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0010	1389	3	0	0	3	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0011	1389	3	2	1	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0012	1389	3	0	0	3	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0013	1389	2	2	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0014	1389	2	0	0	1	0	1	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0015	1389	2	2	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0016	1389	2	0	0	2	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0017	1389	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0018	1389	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0019	1389	1	0	0	0	1	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0020	1389	1	0	0	0	0	1	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0021	1389	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0022	1389	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0023	1389	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0024	1389	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0025	1389	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0026	1389	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0027	1389	1	0	0	0	1	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0028	1389	1	0	0	0	0	1	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0029	1389	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0030	1389	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0031	1389	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0032	1389	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF611_chr19_52697813_52740044	1/1	c0001	2118	209	20	38	106	9	34	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0002	2118	156	43	26	70	6	11	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0003	2118	10	8	0	2	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0004	2118	5	2	2	0	1	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0005	2118	5	5	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0006	2118	3	3	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0007	2118	3	3	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0008	2118	2	0	0	2	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0009	2118	2	2	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0010	1928	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0011	2118	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0012	2118	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0013	2118	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0014	2118	1	0	1	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0015	2118	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0016	2118	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0017	2118	1	0	0	0	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0018	2118	1	0	1	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0019	2118	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0020	2118	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0021	2118	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	c0022	2118	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF613_chr19_51922472_51951621	1/1	c0001	1854	315	50	50	166	14	33	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	c0002	1854	35	18	8	1	2	6	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	c0003	1854	14	13	1	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	c0004	1854	10	9	1	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621