Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF625_chr19_12139890_12161734	0/0	c0003	1119	92	26	14	43	4	5	copy fasta	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	c0004	1119	2	0	0	0	0	2	copy fasta	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	c0005	1119	1	0	1	0	0	0	copy fasta	ZNF625	chr19	12139890	12161734
ZNF626_chr19_20614939_20666571	0/1	c0001	1420	243	28	47	126	11	30	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	1/0	c0002	1587	56	18	4	23	1	9	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0003	1587	22	16	5	0	1	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0004	1420	20	5	6	4	1	4	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0005	1420	12	6	0	4	0	2	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0006	1420	6	6	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0007	1420	4	3	0	0	0	1	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0008	1587	2	0	0	0	0	2	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0009	1420	2	2	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0010	1420	2	1	1	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0011	1419	2	0	0	2	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0012	1420	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0013	1587	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0014	1420	1	0	1	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0015	1420	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0016	1336	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0017	1420	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	c0018	1587	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF627_chr19_11592483_11624161	1/1	c0001	1386	289	76	58	113	10	30	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0002	1386	23	5	8	3	2	5	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0003	1386	2	2	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0004	1386	1	0	1	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0005	1386	1	0	0	0	0	1	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0006	1386	1	0	0	1	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0007	1386	1	1	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0008	1386	1	0	0	1	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0009	1386	1	0	1	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	c0011	1396	1	1	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF628_chr19_55471617_55489487	0/0	c0001	3180	91	30	13	34	2	12	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	1/0	c0002	3180	85	4	8	68	2	2	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/1	c0003	3180	45	5	17	2	5	15	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0004	3180	30	7	12	2	4	5	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0005	3180	23	2	3	16	1	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0006	3180	9	0	4	1	1	3	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0007	3180	8	0	0	8	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0008	3181	8	4	0	3	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0009	3180	8	7	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0010	3180	6	6	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0011	3180	6	6	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0012	3180	5	4	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0013	3181	5	0	1	3	1	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0014	3181	4	0	0	4	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0015	3181	4	0	1	3	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0016	3180	3	3	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0017	3181	3	0	2	0	1	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0018	3180	3	3	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487