Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF653_chr19_11478429_11510839	0/0	c0009	1848	3	0	2	0	0	1	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0010	1839	3	3	0	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0011	1848	1	0	0	0	0	1	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0012	1848	1	0	0	1	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0013	1848	1	1	0	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0014	1848	1	0	0	1	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0015	1848	1	1	0	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0016	1848	1	1	0	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0017	1848	1	1	0	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF654_chr3_88054255_88149660	0/1	c0001	3387	115	38	22	44	3	7	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	1/0	c0002	3387	76	26	14	26	2	7	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0003	3387	9	0	9	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0004	3387	8	8	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0005	3387	4	4	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0006	3387	1	0	0	1	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0007	3387	1	0	0	1	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0008	3387	1	0	0	1	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0009	3387	1	0	0	1	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0010	3387	1	1	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0011	3387	1	0	1	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0012	3387	1	1	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	c0013	3387	1	0	0	0	1	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF655_chr7_99553642_99581453	1/1	c0001	1476	359	86	62	151	16	42	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	c0002	1476	5	5	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	c0003	1476	1	0	0	1	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	c0004	1476	1	0	0	0	0	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	c0005	1476	1	0	0	0	0	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	c0006	1476	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF658_chr9_66895725_66926426	0/1	c0001	3180	147	33	29	68	6	10	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0002	3180	91	5	18	58	2	8	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	1/0	c0003	3180	70	10	11	22	4	22	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0004	3180	34	16	7	6	3	2	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0005	3177	25	0	1	24	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0006	3180	12	1	7	0	1	3	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0007	3180	11	4	1	6	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0008	3180	5	5	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0009	3180	5	1	1	1	0	2	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0010	3180	3	3	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0011	3180	3	0	0	3	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0012	3180	2	0	2	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0013	3180	2	0	0	2	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0014	3180	2	2	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0015	3180	2	2	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0016	3180	1	1	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0017	3180	1	0	1	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0018	3180	1	1	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0019	3180	1	1	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0020	3180	1	0	0	0	0	1	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0021	3180	1	1	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0022	3180	1	0	0	1	0	0	copy fasta	ZNF658	chr9	66895725	66926426