Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF688_chr16_30564726_30576714	0/0	c0005	831	1	1	0	0	0	0	copy fasta	ZNF688	chr16	30564726	30576714
ZNF689_chr16_30597558_30615389	1/1	c0001	1503	305	66	70	121	14	32	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	c0002	1503	17	16	1	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	c0003	1503	9	9	0	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	c0004	1503	1	0	1	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	c0005	1503	1	0	0	1	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	c0006	1503	1	1	0	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	c0007	1503	1	0	1	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	c0008	1503	1	0	1	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	c0009	1503	1	0	0	1	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	c0010	1503	1	0	0	1	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF691_chr1_42841613_42857477	1/0	c0001	948	441	98	68	218	14	42	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	c0002	948	1	0	0	1	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	c0003	948	1	0	0	1	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/1	c0004	948	1	0	0	0	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF692_chr1_248845008_248864085	1/1	c0001	1560	314	61	46	157	17	31	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0002	1560	79	25	12	36	1	5	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0003	1560	4	4	0	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0004	1560	4	0	0	4	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0005	1560	3	0	3	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0006	1560	1	0	0	1	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0007	1560	1	0	1	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0008	1560	1	1	0	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0009	1560	1	0	1	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0010	1560	1	0	1	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0011	1560	1	0	0	1	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0012	1560	1	1	0	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	c0013	1560	1	0	0	1	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF695_chr1_246980323_247013057	0/0	c0001	1548	117	9	37	41	8	22	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0002	1548	38	20	11	0	2	5	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0003	1548	16	13	3	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	1/0	c0004	1548	16	2	2	1	1	9	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0005	1548	13	11	2	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0006	1548	11	10	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0007	1548	11	2	0	6	1	2	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0008	1548	10	9	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0009	1548	7	5	1	0	1	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0010	1548	5	5	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0011	1548	4	2	1	0	1	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0012	1548	3	2	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/1	c0013	1548	2	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0014	1548	2	1	0	0	0	1	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0015	1548	2	2	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0016	1548	1	1	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0017	1548	1	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0018	1548	1	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0019	1548	1	1	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0020	1548	1	0	0	0	0	1	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0021	1548	1	1	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	c0022	1548	1	0	0	1	0	0	copy fasta	ZNF695	chr1	246980323	247013057